Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938583.1_cds_XP_016483412.1_74529
CDS Infomation

[gene=LOC107804099] [db_xref=GeneID:107804099] [protein=pentatricopeptide repeat-containing protein At2g34400-like] [protein_id=XP_016483412.1] [location=complement(join(33689..34640,35464..36380))] [gbkey=CDS]
Sequence

ATGTTTCTTAGAGCTGAACTCCAACCATGTAAAATCTCCCGCTTTTTCTCAATTGAAGCA
ACAAAACAGGCTTTCAATAATCAACAAGGATATTCTCCCATTACTCAACAACTCTTACGC
CTCTTAAATAAATGCATAACAATCAAACAAGTCCAACAAATTCATACCCAAATGTTAATT
TACTCTATAGACAAAGCCAACTATTTGCTCTCAAAAATTATAGACCTAAAACATTTCAAC
TATGCCACTCTTCTATTTTCACATATTCATAGCCCCAATGAGTATGCATTTAATATATTG
ATAAGAGGACTAACTACAACATGGCAAAAATTTGATCTTTCTTTGGAACTTTACTACAAA
ATGAAGTCTTTAGGCTTGAAAACTGATAATTTCACTTATCCTTTTGTGTTTATGTGTTGT
GGGAATCTTTTAGCAGTGGAACTTGGTAAATTAGCTCATTGTGAGGTGGTGAAAAATGGG
TTGTTTGTGGATTTTCACGTTGGTCACTCCTTGATTACTATGTATTCAAGAATTGGGAAG
ATGGGTTTTGCAAGGAAAATGTTTGATGAAATGTCGCAAAGAGATTTGGTTTCGTGGAAT
TCAATGATTTCAGGGTATGCTCAAACGGGTTGCTCGAGAGAGGCAGTGGGATTGTTTATT
GAGATGAGGAATGAGGGGTTTGAACCTGATGAGAGGACACTTGTGAGTGTTCTTGGGGCA
TGTGGTGACTTGGGGGATGTGAGTTTGGGAAAGCGGGTAGAGGAGTATGTTGTGGAGAAG
AGAATGGAGCTGAATTCTTTTATGGGTTCTGCTTTGATTAACATGTATGGGAAGTGTGGA
GATTTGGTTTCTGCTAGAAGGATCTTTGATGGCATGAAGAAGAAAGATGTGATTACTTGG
AATGCGATGATTTCAGGGTATGCACAAAATGGGTTGTCCGATGAAACAATCTCTTTGTTC
AATGCCATGAAGGAGACAGGAGTTAACCTAAATAATATCACACTGGTAAGTGTTCTTTCT
GCATGTGCTTCAATTGGAGCCTTGGATGTTGGAAAATGCATTGATGACTATGCGTCAAGA
AGAGGTATAAAGCATGACATATATGTAGCTACAGCCTTAATTGATATGTATGCAAAATGC
GGCAATCTGGATGATGCATATCAAATTTTTGAAAGCATGCCTAGAAAAAATGAGGTCTCT
TGGAATGCAATGATCTCTGCTCTTGCCTTTCACGGAAGAGCACAAGAGGCGTTATCCCTG
TTTGAGCGAATGTCACTCGAGAGTAGTGATTCCCGCCCTGATGATGTCACATTTGTTGGA
GTACTCTCCGCATGTGTACATGCAGGATTGGTTGATGAAGGCAGGTGCTTGTTTGATCTA
ATGAGTTCGTCGTTTGGATTGGTTCCAAAAGTTGAGCATTACTCTTGCATGGTTGACCTT
TTGTCTCGTGCTGGTCGTGTATATGAGGCATGGGAGTTTATCGAGAAGATGCCTCAAAAG
CCAGATGAGATTTTACTTGGGGCATTGCTTGGTGCATGTCAAAAGCTGAAAAATATTGAT
GTTGGGGAACGAGTGATGCAGCTACTTCTGGAGATGGAACCATCGAATTCGGGTAATTAT
ATAATATCATCAAAGATATATGCAAATCTCAGAAGGTGGGATGATTCAGCAAGGATGAGA
CAATTAATGAGACAAAAAGGTGTTACTAAAATTCCAGGTTGTAGCTGGATTGAGATGGAT
TCTCAACTCGTTGAATTTCGTGCTGGCAGTTCATCCCATCCAATTGCAGATGAGATTCAC
CAGGCACTTGACTTGTTGTATGAGGAGATGGCTATAGAAGGTTATGTTCCAAATGTGAAT
CTTGTATAG

Peptide Sequence

PEP ID

XP_016483412.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Nicotiana tabacum]
Sequence

MFLRAELQPCKISRFFSIEATKQAFNNQQGYSPITQQLLRLLNKCITIKQVQQIHTQMLI
YSIDKANYLLSKIIDLKHFNYATLLFSHIHSPNEYAFNILIRGLTTTWQKFDLSLELYYK
MKSLGLKTDNFTYPFVFMCCGNLLAVELGKLAHCEVVKNGLFVDFHVGHSLITMYSRIGK
MGFARKMFDEMSQRDLVSWNSMISGYAQTGCSREAVGLFIEMRNEGFEPDERTLVSVLGA
CGDLGDVSLGKRVEEYVVEKRMELNSFMGSALINMYGKCGDLVSARRIFDGMKKKDVITW
NAMISGYAQNGLSDETISLFNAMKETGVNLNNITLVSVLSACASIGALDVGKCIDDYASR
RGIKHDIYVATALIDMYAKCGNLDDAYQIFESMPRKNEVSWNAMISALAFHGRAQEALSL
FERMSLESSDSRPDDVTFVGVLSACVHAGLVDEGRCLFDLMSSSFGLVPKVEHYSCMVDL
LSRAGRVYEAWEFIEKMPQKPDEILLGALLGACQKLKNIDVGERVMQLLLEMEPSNSGNY
IISSKIYANLRRWDDSARMRQLMRQKGVTKIPGCSWIEMDSQLVEFRAGSSSHPIADEIH
QALDLLYEEMAIEGYVPNVNLV

Transcript Sequence

Gene sequence data has not been registered.